Thank you for the help James!
I was also able to find this solution using Labtalk in the same script window that you could put the Python script in.
run.python("C:\PathTo\MyFile\MyPythonScript.py", 2);
Did not know you could put the path to the file when using "2" as the second argument. Very useful if someone wants their python scripts all in one file than within the Origin project.