Jose,
Any files which are not updated by the patch due to user modifications can be downloaded and individually extracted from a single zip file by going to the Important Considerations section of the Origin 6.0 Service Release Patch 2 download page.
Please note that these files were temporarily unavailable during the initial launch of SR2 due to a technical difficulty. Microcal Software apologizes for any inconvenience this may have caused you.
Sincerely,
Ryan Toomey
Microcal Software Technical Support