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 PCA - error message
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gotophysics

Germany
2 Posts

Posted - 10/16/2015 :  05:50:13 AM  Show Profile  Edit Topic  Reply with Quote  View user's IP address  Delete Topic
Hello @all,

I'm a student and work with Origin 9 Pro.
At the Moment I try to distinguish different NIR-spectra with a PCA.
Therefore I have 4 samples (objects) with their belonging frequency-dependind absorptionvalues (234 variables).

My Problem is that I can't perform a PCA. I put the objects (sample names) in the raws of column A(X) and the absorption values for each wavenumber in the colums B(Y) up to C234(Y):

A(X) B(Y) C1(Y) C2(Y) C3(Y) C4(Y) ...
sample1 --> 236 Absorption values (spectra of sample 1)
sample2 --> 236 Absorption values
sample3 --> 236 Absorption values
sample4 --> 236 Absorption values

So each row contains one spectra as each column contains the absorption values of one frequency of 4 different samples.

Now I'd like to perform the PCA, but I get the error message that the numbers von objects is lower than the number of variabels, so a PCA can not be performed.

But if I Change raws and colums I have a different problem. The PCA works, but the results are unphysical. The PCA assumes 4 Absorption values, belonging to one wavenumber BUT to 4 different samplespectra. I'd like to reduce the whole spectra of one sample to the principal components.

Can you give me some advises how to proceed?
Thank you very much.

easwar

USA
1964 Posts

Posted - 10/16/2015 :  3:03:33 PM  Show Profile  Edit Reply  Reply with Quote  View user's IP address  Delete Reply
Hi gotophysics,

The PCA tool was improved after 9.0, and this restriction has been removed.

You can download the version 2015 evaluation version, install as OriginPro, and try with your data. Go here to download:
http://originlab.com/demodownload.aspx

Easwar
OriginLab
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gotophysics

Germany
2 Posts

Posted - 10/19/2015 :  02:44:30 AM  Show Profile  Edit Reply  Reply with Quote  View user's IP address  Delete Reply
Hi easwar,
thank's for this advise.
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