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verrallr@a
Canada
44 Posts |
 Posted - 03/16/2009 : 10:37:34 AM
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Origin Ver. and Service Release (Select Help-->About Origin):Origin 8 SR4.
Operating System:Windows XP
We have used this code with Origin 7.5, but it doesn't work with Origin 8. Can you help me.
MAIN]
// "an" list area number. Next line deletes all Area Graphs if they exist. If no area graphs exist
// then "exist" defaults to No and loop exits immediately.
loop (i,1,an) {
if (exist(area$(i))!=0) {del area$(i);del area$(i)_A1;del area$(i)_A2;del area$(i)_A3;};
};
del -v an; del -a; del baseline; //INITIALIZE:
// Next lines open data txt file. %H is the current worksheet file. So, this is give then hard name %N.
getfile *.txt;
open -w %A; %N=%H; //OPEN FILE. %H is the active page (the worksheet). %N gives it a fixed name.
win -z; //MAXIMIZE WINDOW
ColNum= wks.maxRows;
getyesno (Do you want the time column to be corrected?) Var (Time column);
If (Var == 1) {
for (ii = 1; ii <= ColNum;ii ++)
{
Col(times)[ii]=5*ii;
};
};
%Q=%(%N,@#); //Records the number of columns in the worksheet.
tempcol=(%Q<9?6:10); //SET DEFAULTS FOR THE WORKSHEET COLUMNS NAMES.
currentcol=tempcol-1;
timecol=1;
// Data file to be default columns for timecol, currentcol and tempcol.
getn -s (time col) timecol (current col) currentcol (temp col) tempcol (SELECT COLUMNS FOR PLOTTING);
secs=24*3600; st=wcol(timecol)[1]; wcol(timecol)-=st;
if (%Q<9) wcol(timecol)*=secs;
if(%Q>9) wcol(currentcol)*=1000.;
//Check for Glitches in the lednma column.
Getyesno (Fix potential glitches in the ledmna column) fixx (Glitches in ledman column?);
If (fixx==1){
For (ii=1;ii<=ColNum;ii++) {
If(%N_iednma[ii]>0.01) {
aa=%N_iednma[ii];
bb=%N_iednma[ii+1];
mm=Abs((aa-bb)/aa);
if (mm>0.2) {
cc=%N_iednma[ii+2];
if (Abs((aa-cc)/aa)<0.2) %N_iednma[ii+1]=aa;
};
};
};
};
work -s currentcol 0 currentcol 0; //SELECTS THE CURRENT COLUMN FOR PLOTTING
run.section(Plot,LineSymbol); //PLOTS THE DATA.
axis -ps x a 3; //PUTS TOP AXIS ON GRAPH
layer -n Y; //ADDS NEW LINKED LAYER WITH RIGHT Y AXIS
layer -i %(%n,tempcol); //PLOTS TEMP CURVE
layer -a; //SCALES TEMP CURVE
layer2.y.from=0; //FORCES TEMP CURVE TO START WITH ZERO
label -yr Temperature (C); //PUTS TEMPERATURE ON Y AXIS
yr.rotate=90; //ROTATES TEMPATURE 90.
layer -i200 %(%N,tempcol); //changes plot to line
set %(%N,tempcol) -c 2; //color for temp plot.
layer2.y2.color=color(red); //makes tics black
//SET SYMBOL SHAPE AND FILL AND GET AXES SET PROPERLY
page.active=1; //SETS LAYER 1 AS ACTIVE
set %(%N,currentcol) -k 2; //SETS CURRENT COL TO BE CIRCLES
set %(%N,currentcol) -kf 1; //SETS INTERIOR TO BE OPEN (HELP SEEMS TO BE ONE DIGIT WRONG)
set %(%N,currentcol) -z 4; //SET SIZE TO BE 4 UNITS.
layer1.x.from=0; //PUTS X AXIS TO START FROM ZERO
c=-6;
label -j 1 -p 50 c -s %N; //PUTS file NAME AT TOP CENTRE. (C=-6 INDICATES ABOUT UPPER Y AXIS)
label -xb Time (sec); //BOTTOM X LABEL
label -yl Titration Current (\g(m)A); //LEFT Y LABEL
label -r legend; //DELETE THE LEGEND LABEL.
win -r graph1 %N_Graph; //CHANGE THE NAME OF THE GRAPH FILE TO //O041228_GRAPH OR EQUIVALENT.
//LOOP TO CHOOSE SCALE
page.active=1; //MAKES SURE LAYER 1 IS ACTIVE
GETYESNO (Re-Scale AXES?) yes (AXES); //ASK READER IF HE WANTS TO RESCALE AXES
//K AND KK ARE DUMMIES. WE JUST QUESTION IF YES=1 OR YES=0.
for (k=1;yes!=0;kk=1) {
GETN (X1=) X1 (X2=) X2 (Y1=) Y1 (Y2=) Y2 (AXES SCALE);
GETYESNO (AGAIN?) yes (AXES);
};
//CHECK FOR UNEXPECTED ZEROS IN TEMP DATASET
//FAIRLY SIMILAR TO "CHOOSE SCALE" ITEM.
//getyesno (Fix temperature graph?) tfix (IRREGULAR ZEROS);
//if (tfix==1) {
// startfix=xindex(x1,%(%N,tempcol)); endfix=xindex1(x2,%(%N,tempcol));
// for (i=startfix;i<=endfix;i++1) {if (%(%N,tempcol,i)<10) {mark -m //%(%N,tempcol) -b i -t 1}}
//};
label -p (-10) 115 -s -n Datenam "Graph created $(@D,D20) h";
Datenam.fsize=16; //FORMAT SIZE=16 FOR DATENAM
page.connect=1; //CONNECT MISSING IN LINE DATA PLOTS.
//type -b DONE!; //INPUTS TO READER "DONE"
[BASELINE]
//GETPTS AT BOTTOM CHOOSES TWO DATA POINTS FOR BASELINE. THE REST OF THE FILE
//STARTING WITH "def EndToolBox" IS A MACRO THAT BEGINS RIGHT AFTER GETPTS.
//THIS IS NEEDED BECAUSE GETPTS DOESN'T WAIT FOR THE REST OF THE PROGRAM.
//BUT THE MACRO def EndToolBox BEGINS ONLY AFTER GETPTS IS DONE LOOKING FOR
//POINTS. ESSENTIALLY THIS IS A TRICK TO FORCE REST OF PROGRAM TO BEGIN
//ONLY AFTER GETPTS IS DONE.
//def EndToolBox MUST START BEFORE THE GETPTS ITEM. IF NOT GETPTS HAS A DEFAULT.
def EndToolBox
{
layer -s 1; //SETS THE ACTIVE LAYER TO 1
mkx1=_xpos[1];mkx2=_xpos[2]; //GETS THE 2 XPOSITIONS INTO VBLES
//NOW PUT THE CURRENTCOL VALUES INTO TWO OTHER VBLES.
mk1=xindex(mkx1,%(%N,currentcol)); mk2=xindex1(mkx2,%(%N,currentcol));
create base -t 12; //CREATES A TEMPORARY DATASET 12 PTS
mk1s=mk1-3; //TWO MORE VBLES SET TO EQUAL -3.
mk2s=mk2-3; //THIS IS SO WE CAN PERFORM AVERAGE VALUES OVER 6 PTS.
copy -b mk1s %(%N,currentcol) base -b 1 -e 6; //CREATES 6 POINTS FOR AVERAGE - INSTEAD OF ONE ONLY.
copy -b mk2s %(%N,currentcol) base -b 7 -e 12;
lff=sum(base); //CREATES A DATA SET CONTAINING SUMS TO N
lffy1=lff[6]/6;lffy2=(lff[12]-lff[6])/6; //GETS Y AVERAGES
//CREATES DATASET AND PUT IN X,Ys
create baseline -c 2; //CREATES BASELINE OF TWO POINTS
baseline_A={mkx1,mkx2}; //baseline_A IS THE TWO X POINTS OF GETPTS.
baseline={lffy1,lffy2}; //baseline Y IS THE TWO AVERAGE Y VALUES.
slop=(baseline[2]-baseline[1])/(baseline_A[2]-baseline_A[1]); //FORMULATE THE SLOPE OF CURVE.
window -a %N_Graph; //SETS %N_Graph TO BE THE WINDOW SELECTED.
layer -s 1; //SETS THE ACTIVE LAYER TO 1.
layer.include(baseline,200); //CREATES THE CURVE baseline ONTO THE GRAPH. LINE GRAPH.
del lff; del -v lffy1; del -v lffy2;
//del base;
type -b DONE!\r\nslope is $(slop) microamp/sec;
};
getpts -a (Choose two points for baseline determination. Dble-click or Click/Enter) 2 ;
[AREA]
//THIS SECTION USES GETPTS IN SIMILAR WAY TO THE PREVIOUS SECTION.
if (exist(an)==0) {an=1;} else {an=an+1;}; //BEGINS an PARAMETER. SETS TO 1 IF FIRST CURVE; an+1 OTHERWISE.
LN=0;
def QuitToolBox {an=an-1;}; //IF PROBLEM WITH GETPTS, SET an=an-1
def EndToolBox
{
def QuitToolBox {}; // IS THIS NECESSARY??
page.zoomWhole=1; //ZOOMS TO FULL PAGE SO THAT GRAPHS ARE RIGHT SIZE
mkx1=_xpos[1];mkx2=_xpos[2];
mk1=xindex(mkx1,%(%N,currentcol));mk2=xindex(mkx2,%(%N,currentcol));
end=mk2-mk1;
create area$(an) -w end A1 A2 A3; // Create a worksheet with #rows=end, cols named A1...
window -a area$(an); // activates the new worksheet
work -t 1 4;work -t 2 1;work -t 1 4; //SETS COLUMN TYPES
copy -b mk1 %(%N,timecol) area$(an)_A1 -b 1 -e end;
copy -b mk1 %(%N,currentcol) area$(an)_A2 -b 1 -e end;
loop (i,1,end) {col(3)[i]=baseline(col(1)[i])};
work -s 2 0 3 0;
run.section(plot,fillarea); //RUN THE fillarea OF THE plot SECTION.
ffp=an*3; ffc=an+18;
set area$(an)_A2 -pfp ffp; //SET THE FILLPATTERN TO ffp
set area$(an)_A2 -cf ffc; //SET THE COLOR TO ffc
label -r xb; label -r yl; //GET RID OF GRAPHS, I THINK.
layer.x.showAxes=0;layer.x.showLabels=0; //GET RID OF AXES LABELS (TO THEM MERGE GRAPHS)
layer.y.showAxes=0;layer.y.showLabels=0;
win -m; //MERGES ALL GRAPHS
ln=2+an;
layer$(ln).y.from=layer1.y.from;layer$(ln).y.to=layer1.y.to; //SCALE AXES TO BE SAME
layer$(ln).x.from=layer1.x.from;layer$(ln).x.to=layer1.x.to;
layer$(ln).link=1;layer$(ln).x.link=1;layer$(ln).y.link=1; //AXES LINK
layer.unit=7; //SETS DIVISIONAL (i.e. UNIT) OF LAYER TO % OF LINKED LAYER
//READ IN MASS OF SAMPLE FOR AREA INTEGRATION AND CALC. OF STOICHOMETRY CHANGE
getn -s (Mass in mg = ) mass (Sample Mass);
integrate -r area$(an)_A3 area$(an)_A2;
wtper100mg=8*integ.area/(964950*mass);
deltasto=wtper100mg*2.7/16; //with mass in mg and current in microamps
end2=end/2; xloc=area$(an)_A1[end2]; yloc=area$(an)_A2[end2];
label -a xloc yloc -j 0 -s -sa -n OU$(an) "Area of peak is equivalent\r\nto \g(D)(O/U) = $(deltasto)Wt.(mg) of Ox per 100 mg\r\nsample = $(wtper100mg)"; OU$(an).fSize=18;
// Next 2 lines would put in a hidden label of wt. per 100 mg.
//label -a xloc yloc -j 0 -s -n wt$(an) wt(mg)/100mg of sample is $(wtper100mg);
//wt$(an).show=0;
window -c area$(an);win -c %N_GRAPH;win -c graph1; win -r graph2 %N_GRAPH;
run.section(STANDARD,Refresh);
type -b DONE!;
};
getpts -a 2 (Pick start and end pts for integration);
There is more to this code, but I think this should give the problem.
[MAIN] work fine, but the problems ari in [BASELINE]
In particular, in the section [Baseline] the statement
getpts -a (Choose two points for baseline determination. Dble-click or Click/Enter) 2 ;
gives an error.
And, also in [BASELINE], there should be a baseline curve in the graph.
I will show the graph the graph we want to work on:
Time U(up)/mV I(up)/A U(down)/mV I(down)/A T(oven)
00:06:45.3 1200.66 0.00 180.11 26884.02 50.00
00:07:06.7 1200.85 0.00 179.89 26879.98 50.00
00:07:28.0 1200.99 0.00 180.08 26881.65 50.00
00:07:49.3 1200.76 0.00 179.97 26868.78 50.00
00:08:10.7 1201.06 0.00 180.31 26872.33 50.00
00:08:32.0 1201.15 0.00 179.67 26877.28 50.00
00:08:53.3 1201.30 0.00 180.19 26896.83 50.00
00:09:14.7 1201.56 0.00 180.03 26864.81 50.00
00:09:36.0 1201.85 0.00 179.96 26872.43 50.00
00:09:57.3 1201.92 0.00 180.11 26862.37 50.00
00:10:18.7 1201.76 0.00 180.14 26877.35 50.00
00:10:40.0 1202.02 0.00 180.04 26863.72 50.00
00:11:01.3 1202.14 0.00 178.94 26824.90 50.00
00:11:22.7 1202.36 0.00 179.87 26873.82 50.00
00:11:44.0 1202.12 0.00 180.92 26838.56 50.00
00:12:05.3 1202.49 0.00 180.24 26831.97 50.00
00:12:26.7 1202.66 0.00 179.95 26849.33 50.00
00:12:48.0 1202.64 0.00 179.93 26871.39 50.00
00:13:09.3 1202.57 0.00 179.46 26863.08 50.00
00:13:30.7 1202.51 0.00 179.97 26853.95 50.00
00:13:52.0 1202.73 0.00 180.07 26847.55 50.00
00:14:13.3 1203.06 0.00 180.06 26859.93 50.00
00:14:34.7 1203.04 0.00 180.44 26867.12 50.00
00:14:56.0 1203.24 0.00 179.89 26871.32 50.00
00:15:17.3 1203.01 0.00 178.29 26838.61 50.00
00:15:38.7 1203.60 0.00 179.87 26875.09 50.00
00:16:00.0 1203.27 0.00 180.04 26858.77 50.00
00:16:21.3 1203.56 0.00 179.89 26868.37 50.00
00:16:42.7 1203.61 0.00 179.99 26873.39 50.00
00:17:04.0 1203.62 0.00 180.24 26855.01 50.00
00:17:25.3 1203.57 0.00 180.15 26867.22 50.00
00:17:46.7 1203.96 0.00 179.75 26865.91 50.00
00:18:08.0 1204.31 0.00 179.80 26850.04 50.00
00:18:29.3 1204.36 0.00 179.89 26861.78 50.00
00:18:50.7 1204.31 0.00 179.99 26870.33 50.00
00:19:12.0 1204.39 0.00 179.86 26867.59 50.00
00:19:33.3 1204.38 0.00 179.17 26859.71 50.00
00:19:54.7 1204.38 0.00 179.88 26871.99 50.00
00:20:16.0 1204.41 0.00 180.07 26864.47 50.00
00:20:37.3 1204.63 0.00 180.01 26845.09 50.00
00:20:58.7 1204.71 0.00 180.22 26854.29 50.00
00:21:20.0 1204.65 0.00 179.93 26870.27 50.00
00:21:41.3 1204.98 0.00 179.95 26868.91 50.00
00:22:02.7 1204.82 0.00 179.72 26872.20 50.00
00:22:24.0 1204.64 0.00 179.88 26860.80 50.00
00:22:45.3 1204.65 0.00 179.90 26855.40 50.00
00:23:06.7 1204.44 0.00 179.99 26872.51 50.00
00:23:28.0 1204.56 0.00 180.01 26858.69 50.00
00:23:49.3 1204.26 0.00 180.03 26866.21 50.00
00:24:10.7 1204.52 0.00 179.89 26868.64 50.00
00:24:32.0 1204.41 0.00 179.84 26866.18 50.00
00:24:53.3 1204.41 0.00 179.89 26831.96 50.00
00:25:14.7 1204.58 0.00 179.90 26871.24 50.00
00:25:36.0 1204.69 0.00 179.90 26875.63 50.00
00:25:57.3 1204.44 0.00 180.11 26838.34 50.00
00:26:18.7 1204.39 0.00 180.01 26867.78 50.00
00:26:40.0 1204.56 0.00 179.85 26864.44 50.00
00:27:01.3 1204.70 0.00 179.92 26871.23 50.00
00:27:22.7 1204.49 0.00 179.82 26862.79 50.00
00:27:44.0 1204.73 0.00 179.89 26845.53 50.00
00:28:05.3 1204.50 0.00 179.90 26875.64 50.00
00:28:26.7 1204.43 0.00 179.94 26867.80 50.00
00:28:48.0 1204.98 0.00 179.88 26857.03 50.00
00:29:09.3 1204.80 0.00 179.96 26868.07 50.00
00:29:30.7 1204.40 0.00 180.02 26865.59 50.00
00:29:52.0 1204.56 0.00 180.44 26878.06 50.00
00:30:13.3 1204.72 0.00 179.97 26855.88 50.00
I hope I have put it enough to show the problems we are having.
Richard Verrall |
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Deanna
China
Posts |
Posted - 03/16/2009 : 10:07:29 PM
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The last line in your [baseline] section is:
getpts -a (Choose two points for baseline determination. Dble-click or Click/Enter) 2 ;
This is problematic. Looking at the help file of the getpts command, you can see the number of points to get should be specified right after "-a" and before the prompted message. Please try to change it as the follows to see if the problem can be fixed:
getpts -a 2 (Choose two points for baseline determination. Dble-click or Click/Enter);
Deanna
OriginLab Technical Services |
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mourisj
Canada
1 Posts |
Posted - 03/19/2009 : 10:20:19 AM
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Thank you, Deanna for your reply.
However, it didn't work.
May I transfer the program and data to you. If yes, I need your email address.
In case you are reluctant to give your address here, my email address is
Verrallr@aecl.ca
Richard
ps. I take Tues and Weds off each week. That is why I didn't respond sooner.
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Origin 7.5 vs Origin 8